PubChem

PubChem is a database of chemical molecules and their activities against biological assays The system is maintained by the National Center for Biotechnology Information (NCBI) a component of the National Library of Medicine which is part of the United States National Institutes of Health (NIH) PubChem can be accessed for free through a web user interface

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Ontology: Examples and Definition

Ontology studies the things while metaphysics studies the rules III Ontology vs Epistemology Ontology and metaphysics both get confused with epistemology but epistemology is easier to separate out Epistemology is the study of knowledge of how we know what we know Whereas ontology and metaphysics are about reality epistemology is about

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smpdb ca

CHEBI:16015 ChEBI PW000186 PathWhiz 6022 PubChem-compound O75746 UniProt Q9UI32 UniProt 6262 PubChem-compound Citrulline 937 ChemSpider 1 0 Ornithine carbamoyltransferase mitochondrial CHEBI:16134 ChEBI 2 0 L-Aspartic acid SubPathwayOutput 439153 PubChem-compound 110-17-8 CAS Arginase-1 50 ChemSpider C00327 KEGG Compound CHEBI:16027 ChEBI 1 0 OXALACETIC_ACID

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XDX Ontology

This ontology was developed at CSIRO in Australia in 2011 If you wish to participate or have any suggestions or comments please contact us at: Email: adminxdx-ontology Background Protein crystallisation is a difficult problem often requiring hundreds to thousands of experiments over weeks months or even years to be carried out before a suitable crystal can be produced for further

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pubchem Posts

Is there any way to obtain PubChem CID using IUPAC name ( via eutils ncbi ) ncbi pubchem written 6 1 years ago by dobule • 10 • updated 6 1 years ago by wdiwdi • 380 2 votes 2 answers 3 8k views 8 follow 2 answers Is there a file about relationship between the cmap name In connectivity map and compound structure (maybe PubChem ID or Drugbank ID) pubchem cmap drugbank written 6 1

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Browsing tags : GO : Nature Precedings

GOAssay: from Gene Ontology to Assays IDentifiers – Towards Automatic Functional Annotation of PubChem BioAssays Rajarshi Guha et al OBJECTIVES: We report on a experiment to functionally annotate PubChem assays using the Gene Ontology Categorizer (GOCat) METHODS and MATERIALS: The assays are processed to filter out non func

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Computerized Approach to Creating a Systematic

The ontology can be used to reason individual components from regimens mentioned in electronic health records (eg R-CHOP maps to rituximab cyclopho This approach represents to our knowledge the largest effort to date to systematically categorize and relate hematology/oncology drugs and regimens The ontology can be used to reason individual components from regimens mentioned in

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DDIEM: drug database for inborn errors of metabolism

Inborn errors of metabolism (IEM) represent a subclass of rare inherited diseases caused by a wide range of defects in metabolic enzymes or their regulation Of over a thousand characterized IEMs only about half are understood at the molecular level and overall the development of treatment and management strategies has proved challenging An overview of the changing landscape of therapeutic

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About PubChem

Learn about PubChem chemical database For latest announcements please visit the PubChem News page PubChem is an open chemistry database at the National Institutes of Health (NIH) "Open" means that you can put your scientific data in PubChem and that others may use it Since the launch in 2004 PubChem has become a key chemical information resource for scientists students and the

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The Comprehensive Antibiotic Resistance Database

The Comprehensive Antibiotic Resistance Database gratefully acknowledges recent funding from the Genome Canada Canadian Institutes of Health Research's Bioinformatics Computational Biology program allowing integration of the Antibiotic Resistance Ontology (ARO) with the Genomic Epidemiology Ontology IRIDA platform and OBO Foundry (see Genome Canada press release)

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ナカムラ 11100196br れこたつ ロンド

について:ながらのちゃぶがこたつになりました☆シンプルなデザイン。こたつもテーブルもこれ1でOKわないときはんですきへ。ヒーター(600Wコントローラー)。なぎ(さ5cm)。

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pubchem Posts

Is there any way to obtain PubChem CID using IUPAC name ( via eutils ncbi ) ncbi pubchem written 6 1 years ago by dobule • 10 • updated 6 1 years ago by wdiwdi • 380 2 votes 2 answers 3 8k views 8 follow 2 answers Is there a file about relationship between the cmap name In connectivity map and compound structure (maybe PubChem ID

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Mining Relational Paths in Integrated Biomedical Data

Mining Relational Paths in Integrated Biomedical Data Bing He1 Jie Tang3 Ying Ding1 Huijun Wang2 Yuyin Sun1 Jae Hong Shin2 Bin Chen2 Ganesh Moorthy4 Judy Qiu2 Pankaj Desai4 David J Wild2* 1School of Library and Information Science Indiana University Bloomington Indiana United States of America 2School of Computing and Informatics Indiana

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PubChem News

PubChem web users will not be directly affected by the data model changes To learn more about this please readthis post (Source: PubChem News) Source: PubChem News - March 14 2019 Category: Chemistry Authors: PubChem Source Type: news PubChem added 1 2 million scientific article links from Thieme Chemistry PubChem added more than a million links to scientific articles with a focus on

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Maxat Kulmanov

The aim of this work is to analyze different semantic similarity measures and their sensitivity on the number of classes as well as on the difference of the number of classes In this work we evaluated large number of similarity measures based on Gene Ontology (GO) semantics because of its high impact and wide use in the bioinformatics community

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DDIEM: drug database for inborn errors of metabolism

Inborn errors of metabolism (IEM) represent a subclass of rare inherited diseases caused by a wide range of defects in metabolic enzymes or their regulation Of over a thousand characterized IEMs only about half are understood at the molecular level and overall the development of treatment and management strategies has proved challenging An overview of the changing landscape of therapeutic

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ontology

These screens reuse the PubChem bioaassay formats – which is both good and bad For example while there are a few standardized columns (such as PUBCHEM_ACTIVITY_SCORE) the bulk of the user [] Posted on April 19 2010 by Rajarshi Guha in bioinformatics | Tagged HTS rnai ontology

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Computerized Approach to Creating a Systematic

The ontology can be used to reason individual components from regimens mentioned in electronic health records (eg R-CHOP maps to rituximab cyclopho This approach represents to our knowledge the largest effort to date to systematically categorize and

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PubChem

PubChem is the world's largest collection of freely accessible chemical information Search chemicals by name molecular formula structure and other identifiers Find chemical and physical properties biological activities safety and toxicity information patents literature citations and more

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] BioAssay Ontology 2 5 BAO Created by: Hande Kk McGinty Janice Kranz Joseph Ostrow Alex Clark Yu Lin Saminda Abeyruwan Uma Vempati Kunie Sakurai Vance Lemmon Ubbo Visser John Turner Stephan Schurer* Contact: Stephan Schurer stephan dot schurer at gmail dot com 3 Feb 2020 unit of measurement It is the definite magnitude of a physical quantity or of time It has a quantity and

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PubChem

PubChem BioActivity DataDicer is a recent new service among the PubChem resources that allows the user to connect genes proteins assays targets pathways and chemical (small-molecule) structures with each other for which links can be established across multiple NCBI databases It presents itself as a search engine for PubChem BioAssay outcomes for queries by molecular descriptors of

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Ontology

Ontology and epistemology are two different ways of viewing a research philosophy Ontology in business research can be defined as "the science or study of being" and it deals with the nature of reality Ontology is a system of belief that reflects an interpretation by an individual about what constitutes a fact

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NA_TMN Info

Blue-color bars show the target interactions confirmed by ChEMBL/PubChem/papers while light-blue bars show the target interactions marked as inconclusive in ChEMBL/PubChem ) Similar Targets of NA_TMN (Target neighbours of NA_TMN: Distances between targets are calculated based on shared drugs and Gene Ontology (GO) annotation similarity)

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PubChem News

PubChem added more than a million links to scientific articles with a focus on chemical synthesis thanks to contributions from the publisher Thieme Chemistry with support from their technology partner InfoChem The Thieme Chemistry data collection in PubChem covers nearly 700 000 chemical substance records nearly 700 000 scientific article

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